PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015891368.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family LBD
Protein Properties Length: 249aa    MW: 28007.6 Da    PI: 6.3789
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015891368.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260116.31.8e-36794187
          DUF260  1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87
                    +C aCk+lrrkC+k+C++apyf+++q  ++fa++hk+FGasnv+kll++lp ++r +a+ ++ yeA+ar++dP+yG+v++i++lqqql
  XP_015891368.1  7 PCGACKFLRRKCVKGCIFAPYFCHDQgVNHFAAIHKVFGASNVSKLLAHLPVSDRCEAAVTISYEAQARLQDPIYGCVSHIFALQQQL 94
                    7*************************77**********************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089120.7136108IPR004883Lateral organ boundaries, LOB
PfamPF031951.5E-34794IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MTGSGSPCGA CKFLRRKCVK GCIFAPYFCH DQGVNHFAAI HKVFGASNVS KLLAHLPVSD  60
RCEAAVTISY EAQARLQDPI YGCVSHIFAL QQQLFYIYIY IYIYIYIYIY QVVSLQAQLA  120
SMKEQAAQSF SSGSAFANPN GKVLYGKLPF SQAPQDWFEP ENKETVPQFN PNLAANSATM  180
TYHGNGVINP NSMEINYENS VKIPDENASY RSFEEVSCFD MQMNNRQYCS FQEADELQSM  240
AFGYINQHS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015891368.10.0PREDICTED: LOB domain-containing protein 29-like
TrEMBLA0A061DQW51e-107A0A061DQW5_THECC; Lateral organ boundaries domain family protein
STRINGVIT_07s0005g03020.t011e-105(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35713366
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58190.15e-60lateral organ boundaries-domain 29